Odd that it came out without an issue. Your pictures are good; however they really don't tell me much other than it does appear that there may be a bit of an interference discrepancy. Do you happen to have a caliper to do some measurements? Measurements would be helpful to pinpoint.
Also have you tried to insert the wheel with the bike upright and not on the stand, as you would after an on the road repair? Do you have another wheel (or hub) that you could try?