The wheel revolves around a center axis. So as long as that is fixed. Which your axle should be unless loose or broken, then any deviation is either the wheel out of true or the tire itself is wonky.
If you have spacers on your axle that you can swap to the other side to give better clearance for tire and rim, then that's acceptable to me. However if your dropouts when the skewer or axle nuts are loose has a space between it and your hub's locknuts or other existing spacers, then that's probably a problem. You have the wrong hub or missing a spacer. to give you the correct OLD for the hub.
Still, something looks un-true. So I'd resolve that no matter how tiny the amount. Most shops will true a wheel for pocket change if nothing special is needed or that the tensions aren't completely wonky requiring everything to be loosened and re-tensioned.