Are those marks on the side of the tube? Tire iron marks? Or is there a similar pattern on the inside of the tire?
One thing I try to do is keep the inner tube untwisted so any damage seen on the tube after being pulled out can be matched with the same spot on both the tire and rim. (And I always mount tire with the label either the valve or the rim weld. I vacillate between the two, Valve is easier and faster but the label gets dirtier from my hands while pumping and the rim weld location has a long history as that is where tubular tire labels are located. Tugs my heart.)